| Segunda Division | 1 | 2006-08-27 | AWAY | Cadiz CF | 3-0 |
| Segunda Division | 2 | 2006-09-02 | HOME | CD Castellon | 4-2 |
| Segunda Division | 3 | 2006-09-10 | AWAY | Hercules Alicante CF | 1-0 |
| Segunda Division | 4 | 2006-09-16 | HOME | Deportivo Alaves | 0-1 |
| Segunda Division | 5 | 2006-09-24 | AWAY | Albacete Palomie | 3-2 |
| Segunda Division | 6 | 2006-09-30 | HOME | Numancia CD | 1-5 |
| Segunda Division | 7 | 2006-10-07 | AWAY | Sporting Gijon | 1-0 |
| Segunda Division | 8 | 2006-10-14 | HOME | Las Palmas | 1-0 |
| Segunda Division | 9 | 2006-10-21 | AWAY | Ciudad de Murcia | 2-0 |
| Segunda Division | 10 | 2006-10-28 | HOME | Polideportivo Ejido | 0-4 |
| Segunda Division | 11 | 2006-11-04 | AWAY | Xerez | 1-0 |
| Segunda Division | 12 | 2006-11-12 | HOME | Real Valladolid | 1-2 |
| Segunda Division | 13 | 2006-11-19 | AWAY | Lorca Deportiva | 1-1 |
| Segunda Division | 14 | 2006-11-25 | HOME | SD Ponferradina | 1-0 |
| Segunda Division | 15 | 2006-12-02 | AWAY | FC Elche | 2-1 |
| Segunda Division | 16 | 2006-12-09 | HOME | Malaga CF | 1-1 |
| Segunda Division | 17 | 2006-12-16 | AWAY | Real Madrid Castilla | 3-2 |
| Segunda Division | 18 | 2006-12-20 | HOME | FC Salamanca | 0-3 |
| Segunda Division | 19 | 2007-01-06 | HOME | CD Tenerife | 2-1 |
| Segunda Division | 20 | 2007-01-14 | AWAY | Real Murcia | 4-3 |
| Segunda Division | 21 | 2007-01-21 | HOME | UD Almeria | 0-1 |
| Segunda Division | 22 | 2007-01-28 | HOME | Cadiz CF | 1-2 |
| Segunda Division | 23 | 2007-02-04 | AWAY | CD Castellon | 0-0 |
| Segunda Division | 24 | 2007-02-11 | HOME | Hercules Alicante CF | 1-1 |
| Segunda Division | 25 | 2007-02-18 | AWAY | Deportivo Alaves | 5-1 |
| Segunda Division | 26 | 2007-02-25 | HOME | Albacete Palomie | 1-0 |
| Segunda Division | 27 | 2007-03-04 | AWAY | Numancia CD | 3-0 |
| Segunda Division | 28 | 2007-03-10 | HOME | Sporting Gijon | 0-2 |
| Segunda Division | 29 | 2007-03-17 | AWAY | Las Palmas | 3-1 |
| Segunda Division | 30 | 2007-03-25 | HOME | Ciudad de Murcia | 0-1 |
| Segunda Division | 31 | 2007-04-01 | AWAY | Polideportivo Ejido | 1-0 |
| Segunda Division | 32 | 2007-04-07 | HOME | Xerez | 2-1 |
| Segunda Division | 33 | 2007-04-15 | AWAY | Real Valladolid | 3-0 |
| Segunda Division | 34 | 2007-04-22 | HOME | Lorca Deportiva | 1-1 |
| Segunda Division | 35 | 2007-04-29 | AWAY | SD Ponferradina | 3-3 |
| Segunda Division | 36 | 2007-05-05 | HOME | FC Elche | 1-4 |
| Segunda Division | 37 | 2007-05-12 | AWAY | Malaga CF | 3-2 |
| Segunda Division | 38 | 2007-05-19 | HOME | Real Madrid Castilla | 2-1 |
| Segunda Division | 39 | 2007-05-27 | AWAY | FC Salamanca | 2-3 |
| Segunda Division | 40 | 2007-06-02 | AWAY | CD Tenerife | 0-2 |
| Segunda Division | 41 | 2007-06-09 | HOME | Real Murcia | 1-1 |
| Segunda Division | 42 | 2007-06-17 | AWAY | UD Almeria | 3-0 |
