| League Two | 1 | 2006-08-05 | AWAY | Grimsby Town | 3-2 |
| League Two | 2 | 2006-08-09 | HOME | Peterborough United | 0-1 |
| League Two | 3 | 2006-08-12 | HOME | Darlington FC | 4-1 |
| League Two | 4 | 2006-08-19 | AWAY | Shrewsbury Town | 5-0 |
| League Two | 5 | 2006-08-26 | HOME | Milton Keynes | 0-1 |
| League Two | 6 | 2006-09-01 | AWAY | Hartlepool United | 2-1 |
| League Two | 7 | 2006-09-09 | HOME | Stockport County | 2-1 |
| League Two | 8 | 2006-09-12 | AWAY | Barnet FC | 3-3 |
| League Two | 9 | 2006-09-16 | AWAY | Accrington Stanley | 2-1 |
| League Two | 10 | 2006-09-23 | HOME | Rochdale AFC | 0-3 |
| League Two | 11 | 2006-09-27 | HOME | Lincoln City | 1-0 |
| League Two | 12 | 2006-09-30 | AWAY | Swindon Town | 1-1 |
| League Two | 13 | 2006-10-07 | AWAY | Bristol Rovers | 1-0 |
| League Two | 14 | 2006-10-14 | HOME | Mansfield Town | 1-1 |
| League Two | 15 | 2006-10-21 | AWAY | Bury | 2-1 |
| League Two | 16 | 2006-10-28 | HOME | Wycombe Wanderers | 0-1 |
| League Two | 17 | 2006-11-04 | HOME | Notts County | 3-3 |
| League Two | 18 | 2006-11-18 | AWAY | Macclesfield Town | 2-3 |
| League Two | 19 | 2006-11-25 | HOME | Hereford United | 1-1 |
| League Two | 20 | 2006-12-05 | AWAY | Chester City | 3-1 |
| League Two | 21 | 2006-12-09 | HOME | Wrexham AFC | 4-0 |
| League Two | 22 | 2006-12-16 | AWAY | Torquay United | 0-1 |
| League Two | 23 | 2006-12-23 | HOME | Walsall FC | 1-1 |
| League Two | 24 | 2006-12-26 | AWAY | Lincoln City | 2-1 |
| League Two | 25 | 2006-12-30 | AWAY | Rochdale AFC | 4-0 |
| League Two | 26 | 2007-01-01 | HOME | Barnet FC | 2-1 |
| League Two | 27 | 2007-01-06 | HOME | Accrington Stanley | 1-0 |
| League Two | 28 | 2007-01-13 | AWAY | Stockport County | 2-0 |
| League Two | 29 | 2007-01-20 | HOME | Swindon Town | 1-3 |
| League Two | 30 | 2007-01-27 | AWAY | Walsall FC | 1-1 |
| League Two | 31 | 2007-02-03 | HOME | Grimsby Town | 0-6 |
| League Two | 32 | 2007-02-10 | AWAY | Darlington FC | 2-0 |
| League Two | 33 | 2007-02-17 | HOME | Shrewsbury Town | 0-3 |
| League Two | 34 | 2007-02-20 | AWAY | Peterborough United | 1-1 |
| League Two | 35 | 2007-02-24 | HOME | Hartlepool United | 0-1 |
| League Two | 36 | 2007-03-03 | AWAY | Milton Keynes | 3-2 |
| League Two | 37 | 2007-03-10 | HOME | Bristol Rovers | 2-1 |
| League Two | 38 | 2007-03-17 | AWAY | Mansfield Town | 1-2 |
| League Two | 39 | 2007-03-23 | AWAY | Wycombe Wanderers | 0-0 |
| League Two | 40 | 2007-03-31 | HOME | Bury | 0-1 |
| League Two | 41 | 2007-04-07 | AWAY | Notts County | 2-0 |
| League Two | 42 | 2007-04-09 | HOME | Macclesfield Town | 4-1 |
| League Two | 43 | 2007-04-14 | AWAY | Hereford United | 3-0 |
| League Two | 44 | 2007-04-21 | HOME | Chester City | 1-0 |
| League Two | 45 | 2007-04-28 | HOME | Torquay United | 1-1 |
| League Two | 46 | 2007-05-05 | AWAY | Wrexham AFC | 3-1 |
